PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC184_p6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 284aa    MW: 32769.4 Da    PI: 9.6175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC184_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.19e-15126176154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +r +h ++Er+RR+++N+ ++ Lr+llP++   + ++++ a+i+  A++Y+k L
  RrC184_p6 126 QRINHIAVERNRRRQMNEHINSLRSLLPPS---YIQRVDQASIVGGAINYVKVL 176
                699***************************...9*****************977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.83E-12124181No hitNo description
SuperFamilySSF474591.96E-17125193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-14125180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.031125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-12126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MQDTVPFLQM LQSEEDPLPF TSFKELLSLQ NFHNHWGLES YLSQNETNRF YHNPVSALSM  60
EVTNHAVSSQ ELPLSREDMT VPSSSSTPNS RRKRKTISNP PPEVTREKRK RRKTKPSKDI  120
EEIENQRINH IAVERNRRRQ MNEHINSLRS LLPPSYIQRV DQASIVGGAI NYVKVLEQVI  180
QSLELQKRAQ QSSRVENRVT CVPRIEATLI QNHVNLKVEC RKKQGQLLKG IVSLEKLRLT  240
VLHLNISSLS LSLVSYCFNL KMEDDCKLES AEEITKVAQQ IFDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192112KRKTISNPPPEVTREKRKRRK
2107112KRKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886001e-79AF488600.1 Arabidopsis thaliana clone bHLH067 putative bHLH transcription factor mRNA, partial sequence.
GenBankAJ6304811e-79AJ630481.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g61950.
GenBankAK1185271e-79AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14.
GenBankAY0887411e-79AY088741.1 Arabidopsis thaliana clone 93825 mRNA, complete sequence.
GenBankBT0052981e-79BT005298.1 Arabidopsis thaliana At3g61950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602621.11e-169PREDICTED: transcription factor bHLH67
SwissprotQ700E41e-109BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A0D3DUZ61e-169A0A0D3DUZ6_BRAOL; Uncharacterized protein
STRINGBra007644.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-100bHLH family protein